Rattle is a decent data-mining utility built on top of GNU R, with one small problem: it is impossible to run outside of the R terminal (e.g. from the shell or a desktop icon/menu).
What this means, on Linux, is that to run Rattle one must start R in a terminal and enter the following commands:
> library(rattle)
Loading required package: pmml
Loading required package: XML
Rattle: Graphical interface for data mining using R.
Version 2.5.3 Copyright (C) 2006-2009 Togaware Pty Ltd.
Type 'rattle()' to shake, rattle, and roll your data.
> rattle()
A Ctrl-D to log out of R is also required.
The big problem (ignoring R's inconsistent handling of stdin/out, which can mostly be solved by using littler) is the R Gtk module starts a separate GUI thread, and quitting R does not do a wait on child threads -- it just kills them.
A workaround to launch rattle from outside of R is to provide a simple wrapper script:
#!/usr/bin/env ruby
require 'open3'
r_prog = `which R`.chomp
Open3.popen3( "#{r_prog} --interactive --no-save --no-restore --slave" ) do | st
din, stdout, stderr |
stdin.puts "library(rattle)"
stdin.puts "rattle()"
puts stdout.read
end
This runs R and launches rattle(), but leaves an R process open in the background once rattle() has exited.
Adding a q() call to the script merely terminates the Rattle GUI child thread. In addition, rattle provides no indication that it is running:
> ls()
character(0)
> library(rattle)
Loading required package: pmml
Loading required package: XML
Rattle: Graphical interface for data mining using R.
Version 2.5.3 Copyright (C) 2006-2009 Togaware Pty Ltd.
Type 'rattle()' to shake, rattle, and roll your data.
> ls()
[1] "Global_rattleGUI" "crs"
[3] "crv" "on_aboutdialog_response"
[5] "rattleGUI" "suppressRattleWelcome"
[7] "viewdataGUI"
> rattle()
> ls()
[1] "Global_rattleGUI" "crs"
[3] "crv" "on_aboutdialog_response"
[5] "rattleGUI" "suppressRattleWelcome"
[7] "viewdataGUI"
# Use Ctrl-Q to exit the Rattle GUI
> ls()
[1] "Global_rattleGUI" "crs"
[3] "crv" "on_aboutdialog_response"
[5] "rattleGUI" "suppressRattleWelcome"
[7] "viewdataGUI"
Once the Rattle library has loaded, there is no way to tell from within R if the Rattle GUI is running or not. Modifying Rattle to create a variable when the GUI loads successfully, and to remove it when the GUI quites, would undoubtedly fix this.
Showing posts with label rattle. Show all posts
Showing posts with label rattle. Show all posts
Sunday, December 6, 2009
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